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@ivanmilevtues ivanmilevtues commented Jul 7, 2025

In this PR I have added the integration to auto-update the diagram docs for mcp-agent.

  • The output is straight in the docs/codeboarding directory
  • .codeboarding is needed to keep metadata for the future generations
  • PAT_TOKEN is a secret you need to add in the Secrets of your repository:
    Scopes:
    repo (full control of private repositories)
    workflow
    read:org, etc.

I was unsure if the GITHUB_TOKEN that you have has those so decided to do a new one, lmk if GITHUB_TOKEN has sufficient rights to create a PR - that is for what PAT_TOKEN is used :)

Summary by CodeRabbit

  • New Features

    • Added comprehensive architectural documentation for core components, workflow patterns, LLM integration, MCP service integration, and the human interaction layer.
    • Introduced JSON configuration files mapping subsystem components, relationships, and architecture for improved system insight.
    • Implemented a GitHub Actions workflow for automated documentation updates.
  • Documentation

    • Added new architectural overview and detailed subsystem documentation pages.
    • Updated documentation navigation to reflect new architecture-focused content.
    • Removed outdated documentation pages to align with the new structure.

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coderabbitai bot commented Jul 7, 2025

Walkthrough

This update introduces a new architectural documentation set for the mcp-agent project. It adds multiple JSON and MDX files that describe and visualize the system’s main components, workflows, and their interrelations. The documentation structure is reorganized, with outdated architectural pages removed and replaced by detailed, modular documentation and configuration files reflecting the current architecture.

Changes

Files/Paths Change Summary
.codeboarding/Agent_Core_LLM_Integration.json, .codeboarding/Agent_Execution_Workflow_Engine.json, .codeboarding/Agent_Workflow_Patterns.json, .codeboarding/Core_Application_Setup.json, .codeboarding/Human_Interaction_Layer.json, .codeboarding/MCP_Service_Integration.json, .codeboarding/analysis.json, .codeboarding/codeboarding_version.json Added new JSON files describing architecture, components, and relations for various subsystems.
.github/workflows/doc-updates.yml Added a GitHub Actions workflow for automated and on-demand documentation updates via CodeBoarding.
docs/codeboarding/Agent_Core_LLM_Integration.mdx, docs/codeboarding/Agent_Execution_Workflow_Engine.mdx, docs/codeboarding/Agent_Workflow_Patterns.mdx, docs/codeboarding/Core_Application_Setup.mdx, docs/codeboarding/Human_Interaction_Layer.mdx, docs/codeboarding/MCP_Service_Integration.mdx, docs/codeboarding/on_boarding.mdx Added new MDX documentation pages for architectural overview and subsystem details.
docs/codeboarding/agent-workflow-framework.mdx, docs/codeboarding/core-orchestration-execution.mdx, docs/codeboarding/intent-interaction-management.mdx, docs/codeboarding/llm-external-tooling.mdx, docs/codeboarding/mcp-api-gateway.mdx, docs/codeboarding/overview.mdx Removed old architectural documentation pages.
docs/docs.json Updated documentation navigation to reflect new and removed pages under the "Architecture" section.

Sequence Diagram(s)

sequenceDiagram
    participant User
    participant Documentation Workflow
    participant CodeBoarding Action
    participant Repository

    User->>Documentation Workflow: Trigger (scheduled or manual)
    Documentation Workflow->>Repository: Checkout code
    Documentation Workflow->>CodeBoarding Action: Generate/update docs & JSON
    CodeBoarding Action->>Repository: Create/Update documentation files
    Documentation Workflow->>Repository: Commit & open PR if changes detected
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Estimated code review effort

🎯 2 (Simple) | ⏱️ ~8 minutes

Poem

In the warren of code, we mapped every path,
With diagrams and docs, no stone left in wrath.
Old scrolls retired, new blueprints unfurled,
Architecture revealed, a bright bunny world.
Hop along, dear devs, through structure and lore—
The agent’s new home is clear to explore!
🐇📚✨

Note

⚡️ Unit Test Generation is now available in beta!

Learn more here, or try it out under "Finishing Touches" below.


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📒 Files selected for processing (1)
  • docs/codeboarding/on_boarding.mdx (1 hunks)
✅ Files skipped from review due to trivial changes (1)
  • docs/codeboarding/on_boarding.mdx
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  • Create PR with unit tests
  • Post copyable unit tests in a comment

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Actionable comments posted: 11

🧹 Nitpick comments (9)
.github/workflows/doc-updates.yml (1)

106-114: Trailing whitespace & missing EOF newline

Lines 106 and 114 contain trailing spaces, and the file lacks a newline at EOF.
These break some linters (yamllint) – please trim and add the final newline.

docs/codeboarding/on_boarding.mdx (1)

33-35: Strip trailing blank line inside <Info> block

There is an extra empty line after the closing block that produces an orphan paragraph in some MDX renderers.

docs/docs.json (1)

67-76: Navigation entries rely on implicit extension

Mintlify resolves pages without an extension, but the repo contains .mdx files. If later converted to .md, the route will break. Consider adding the extension explicitly to future-proof the nav.

.codeboarding/Core_Application_Setup.json (1)

65-75: Typo: “Strategy Pattern” registry is mis-labelled

DecoratorRegistry is described as enabling the “Strategy Pattern”.
Decorators alter behaviour at definition time, while Strategy is a runtime interchangeable-object pattern. Consider rephrasing to avoid confusion.

docs/codeboarding/Human_Interaction_Layer.mdx (1)

7-17: Inconsistent edge-label capitalisation

Graph uses lowercase “uses” for some edges but capitalised “Uses” elsewhere in other docs. Stick to one style to avoid noisy diffs in generated SVGs.

.codeboarding/analysis.json (1)

10-18: Mixed absolute & relative paths – pick one convention

Some reference_file fields are absolute, others repo-relative. This breaks path-based look-ups in doc websites and VS Code CodeTour.

Adopt repository-relative paths everywhere (e.g. src/mcp_agent/mcp/mcp_connection_manager.py).

Also applies to: 28-36, 88-97

docs/codeboarding/Agent_Core_LLM_Integration.mdx (2)

7-18: Add accessible alternative text for the Mermaid diagram

Screen-reader users will not benefit from the visual graph.
Consider adding a short textual summary (e.g. under the diagram or via an HTML <figcaption>) describing the relationships.


38-39: Tighten wording (“consistent manner” → “consistently”)

The phrase “in a consistent manner” is wordy; “consistently” is clearer.

- ... interact with LLMs in a consistent manner, regardless ...
+ ... interact with LLMs consistently, regardless ...
docs/codeboarding/Core_Application_Setup.mdx (1)

68-72: Missing article before “Signal Registry”

Insert “the” for grammatical correctness.

- ### Signal Registry
- Provides a mechanism for registering
+ ### Signal Registry
+ Provides **the** mechanism for registering
📜 Review details

Configuration used: CodeRabbit UI
Review profile: CHILL
Plan: Pro

📥 Commits

Reviewing files that changed from the base of the PR and between 13c378d and 90163e5.

📒 Files selected for processing (23)
  • .codeboarding/Agent_Core_LLM_Integration.json (1 hunks)
  • .codeboarding/Agent_Execution_Workflow_Engine.json (1 hunks)
  • .codeboarding/Agent_Workflow_Patterns.json (1 hunks)
  • .codeboarding/Core_Application_Setup.json (1 hunks)
  • .codeboarding/Human_Interaction_Layer.json (1 hunks)
  • .codeboarding/MCP_Service_Integration.json (1 hunks)
  • .codeboarding/analysis.json (1 hunks)
  • .codeboarding/codeboarding_version.json (1 hunks)
  • .github/workflows/doc-updates.yml (1 hunks)
  • docs/codeboarding/Agent_Core_LLM_Integration.mdx (1 hunks)
  • docs/codeboarding/Agent_Execution_Workflow_Engine.mdx (1 hunks)
  • docs/codeboarding/Agent_Workflow_Patterns.mdx (1 hunks)
  • docs/codeboarding/Core_Application_Setup.mdx (1 hunks)
  • docs/codeboarding/Human_Interaction_Layer.mdx (1 hunks)
  • docs/codeboarding/MCP_Service_Integration.mdx (1 hunks)
  • docs/codeboarding/agent-workflow-framework.mdx (0 hunks)
  • docs/codeboarding/core-orchestration-execution.mdx (0 hunks)
  • docs/codeboarding/intent-interaction-management.mdx (0 hunks)
  • docs/codeboarding/llm-external-tooling.mdx (0 hunks)
  • docs/codeboarding/mcp-api-gateway.mdx (0 hunks)
  • docs/codeboarding/on_boarding.mdx (1 hunks)
  • docs/codeboarding/overview.mdx (0 hunks)
  • docs/docs.json (1 hunks)
💤 Files with no reviewable changes (6)
  • docs/codeboarding/overview.mdx
  • docs/codeboarding/agent-workflow-framework.mdx
  • docs/codeboarding/intent-interaction-management.mdx
  • docs/codeboarding/core-orchestration-execution.mdx
  • docs/codeboarding/mcp-api-gateway.mdx
  • docs/codeboarding/llm-external-tooling.mdx
🧰 Additional context used
🧠 Learnings (15)
📓 Common learnings
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
docs/codeboarding/Human_Interaction_Layer.mdx (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
.codeboarding/analysis.json (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
.codeboarding/Human_Interaction_Layer.json (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
.codeboarding/Agent_Execution_Workflow_Engine.json (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
docs/codeboarding/Agent_Core_LLM_Integration.mdx (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
.codeboarding/Core_Application_Setup.json (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
docs/codeboarding/on_boarding.mdx (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
docs/codeboarding/MCP_Service_Integration.mdx (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
docs/codeboarding/Core_Application_Setup.mdx (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
docs/codeboarding/Agent_Execution_Workflow_Engine.mdx (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
.codeboarding/MCP_Service_Integration.json (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
docs/codeboarding/Agent_Workflow_Patterns.mdx (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/workflows/conversation_workflow.py : Implement conversation-as-workflow pattern: the entire conversation is a single workflow instance, not individual turns.
.codeboarding/Agent_Workflow_Patterns.json (1)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
.codeboarding/Agent_Core_LLM_Integration.json (2)
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/src/{tasks,workflows}/*.py : Use mcp-agent's Agent abstraction for ALL LLM interactions, including quality evaluation, to ensure consistent tool access, logging, and error handling.
Learnt from: CR
PR: lastmile-ai/mcp-agent#0
File: examples/usecases/reliable_conversation/CLAUDE.md:0-0
Timestamp: 2025-06-30T17:58:30.949Z
Learning: Applies to examples/usecases/reliable_conversation/**/mcp_agent.config.yaml : The configuration file mcp_agent.config.yaml must include all required RCM settings (quality_threshold, max_refinement_attempts, consolidation_interval, evaluator_model_provider, verbose_metrics).
🪛 LanguageTool
docs/codeboarding/Agent_Core_LLM_Integration.mdx

[style] ~38-~38: Consider replacing this phrase with the adverb “consistently” to avoid wordiness.
Context: ... of the framework to interact with LLMs in a consistent manner, regardless of the underlying provider....

(IN_A_X_MANNER)

docs/codeboarding/on_boarding.mdx

[misspelling] ~87-~87: This word is normally spelled as one.
Context: ...w_Patterns) Implements various complex, multi-step agent behaviors and patterns. This incl...

(EN_COMPOUNDS_MULTI_STEP)

docs/codeboarding/Core_Application_Setup.mdx

[uncategorized] ~69-~69: You might be missing the article “the” here.
Context: ...r_registry.DecoratorRegistry` ### Signal Registry Provides a mechanism for regis...

(AI_EN_LECTOR_MISSING_DETERMINER_THE)

docs/codeboarding/Agent_Execution_Workflow_Engine.mdx

[misspelling] ~43-~43: This word is normally spelled as one.
Context: ...cture, state, and lifecycle of complex, multi-step processes. It provides the Workflow abs...

(EN_COMPOUNDS_MULTI_STEP)

docs/codeboarding/Agent_Workflow_Patterns.mdx

[misspelling] ~58-~58: This word is normally spelled as one.
Context: ...kflow Responsible for managing complex, multi-step agent behaviors. It defines how agents ...

(EN_COMPOUNDS_MULTI_STEP)

🪛 actionlint (1.7.7)
.github/workflows/doc-updates.yml

55-55: "github.head_ref" is potentially untrusted. avoid using it directly in inline scripts. instead, pass it through an environment variable. see https://docs.github.com/en/actions/security-for-github-actions/security-guides/security-hardening-for-github-actions for more details

(expression)


98-98: the runner of "peter-evans/create-pull-request@v5" action is too old to run on GitHub Actions. update the action's version to fix this issue

(action)

🪛 YAMLlint (1.37.1)
.github/workflows/doc-updates.yml

[error] 106-106: trailing spaces

(trailing-spaces)


[error] 114-114: trailing spaces

(trailing-spaces)


[error] 118-118: no new line character at the end of file

(new-line-at-end-of-file)

⏰ Context from checks skipped due to timeout of 90000ms. You can increase the timeout in your CodeRabbit configuration to a maximum of 15 minutes (900000ms). (1)
  • GitHub Check: checks / test
🔇 Additional comments (6)
.github/workflows/doc-updates.yml (1)

100-102: PAT_TOKEN may be unnecessary – favour GITHUB_TOKEN if possible

Before adding another secret with wide repo scope, verify whether the built-in GITHUB_TOKEN (which already has contents & pull-requests: write in this job) can author the PR. Minimising PAT usage reduces attack surface.

.codeboarding/MCP_Service_Integration.json (1)

24-25: reference_start_line / reference_end_line set to 0

Zero implies “unknown” and breaks some tooling that expects valid ranges. If the exact span is unavailable, omit the keys or supply a sentinel like null.

Also applies to: 36-37, 48-49

.codeboarding/codeboarding_version.json (1)

1-4: Verify that commit_hash is updated by the workflow

This file will quickly drift if the workflow doesn’t rewrite it on every doc run. Confirm that CodeBoarding-GHAction overwrites the value; otherwise this metadata will become stale.

.codeboarding/Human_Interaction_Layer.json (1)

10-13: Placeholder line ranges (1-1) hinder source-jump tooling

All reference_start_line/reference_end_line pairs are 1. Either supply real spans or omit the keys; otherwise IDE deep-links open at top of file, defeating the point of the metadata.

Also applies to: 21-25, 33-37, 45-49

docs/codeboarding/Agent_Workflow_Patterns.mdx (2)

7-25: Confirm that the Mermaid plugin is enabled

The file uses a ```mermaid fenced block. Ensure @docusaurus/theme-mermaid (or equivalent) is installed and `markdown.mermaid: true` is set in `docusaurus.config.js`; otherwise the diagram will be rendered as plain text.


58-60: Spurious LanguageTool “multi-step” warning can be ignored

The hyphenated form multi-step is grammatically correct and preferred in technical writing; no change required.

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Hey @amr01060! I saw your comments, will take a look at them and get back to you asap.

@ivanmilevtues
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@amr01060 I fixed the linking. Let me know if there is something else :)

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